PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 144aa    MW: 15808.7 Da    PI: 8.4584
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002110genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.2e-125175327
                 S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  +lC++f+ tG C+yGd+Ck+ H++
  DCAR_002110 51 PPLCNRFLSTGSCPYGDSCKYLHPK 75
                 69*********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.37E-14444No hitNo description
PfamPF062202.5E-8537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010316.374876IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-64875IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-74978IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-105175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-95379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MPLGKYYCDY CDKEFQDTAY ARKRHLQSIQ HQRAKSLWYQ NYPSALPFPS PPLCNRFLST  60
GSCPYGDSCK YLHPKQNLQS ANTSVSNFTG NFQSLDTNQQ AAGASSQGNI LRDGLGVSLG  120
NLPPSLKPPP EGGYPSLPFV DWG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5212794e-31KJ521279.1 Daucus capillifolius clone cap279764 anonymous marker DC17915 genomic sequence.
GenBankKJ5212834e-31KJ521283.1 Daucus carota subsp. carota clone car279759 anonymous marker DC17915 genomic sequence.
GenBankKJ5212894e-31KJ521289.1 Daucus carota subsp. carota clone carA30254 anonymous marker DC17915 genomic sequence.
GenBankKJ5212934e-31KJ521293.1 Daucus carota subsp. carota clone carA30261 anonymous marker DC17915 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010659728.12e-56PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1
SwissprotQ0JP113e-41C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLD7UA823e-56D7UA82_VITVI; Putative uncharacterized protein
STRINGVIT_14s0060g00610.t018e-56(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120081821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-46C3H family protein